{"slug":"bio-gatk-variant-calling","source_name":"bio-gatk-variant-calling","name":"Bio Gatk Variant Calling","description":"Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, and variant quality score recalibration (VQSR). Use when calling variants with GATK HaplotypeCaller.","version":1,"lift":{"pass_rate_delta_pts":27.27,"pass_rate_pct":36.4,"total_cases":22,"passed_cases":8,"tokens_delta_pct":223,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-07-24T14:48:44.836796+00:00"},"skill_score":0.3636,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":27.27,"with_pass_pct":36.4,"without_pass_pct":9.1,"tokens_delta_pct":223,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"mixed","never_hurt":true,"completed_at":"2026-07-24T14:48:44.836796+00:00","run_id":"0f96a85b-3c40-48c9-8446-1c81d1a918b9","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":null,"content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"5d714b4d75a037f716ebc9de03ac763391439b0af06076e75685470889a36ee9","raw_url":"https://app.decimal.ai/s/bio-gatk-variant-calling/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-gatk-variant-calling"}