{"slug":"bio-phylo-distance-calculations","source_name":"bio-phylo-distance-calculations","name":"Bio Phylo Distance Calculations","description":"Compute evolutionary distances and build phylogenetic trees using Biopython Bio.Phylo.TreeConstruction. Use when creating distance matrices from alignments, building NJ/UPGMA trees, or generating bootstrap consensus trees.","version":2,"lift":{"pass_rate_delta_pts":4.55,"pass_rate_pct":100,"total_cases":22,"passed_cases":22,"tokens_delta_pct":187.2,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-02T16:28:49.105732+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":4.55,"with_pass_pct":100,"without_pass_pct":95.5,"tokens_delta_pct":187.2,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-02T16:28:49.105732+00:00","run_id":"99ab16c1-9311-4b62-8bed-b8bbddba223b","version_number":2,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"5032890aca3c1c77148c8662fdf353107835f717878fc3e21f00e52ec8f70411","raw_url":"https://app.decimal.ai/s/bio-phylo-distance-calculations/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-phylo-distance-calculations"}