{"slug":"bio-population-genetics-linkage-disequilibrium","source_name":"bio-population-genetics-linkage-disequilibrium","name":"Bio Population Genetics Linkage Disequilibrium","description":"Calculate linkage disequilibrium statistics (r², D'), perform LD pruning for population structure analysis, identify haplotype blocks, and visualize LD patterns using PLINK, scikit-allel, and LDBlockShow. Use when calculating LD or pruning variants.","version":2,"lift":{"pass_rate_delta_pts":22.73,"pass_rate_pct":100,"total_cases":22,"passed_cases":22,"tokens_delta_pct":52.7,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-02T16:51:45.245169+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":22.73,"with_pass_pct":100,"without_pass_pct":77.3,"tokens_delta_pct":52.7,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-02T16:51:45.245169+00:00","run_id":"bfc0b689-57a4-4c50-9b87-edab66c0e943","version_number":2,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"63537c2452dab9ccf74723bd7d061d4709d4505adf88bf7cc5cf4f659b79ad78","raw_url":"https://app.decimal.ai/s/bio-population-genetics-linkage-disequilibrium/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-population-genetics-linkage-disequilibrium"}