{"slug":"bio-read-qc-contamination-screening","source_name":"bio-read-qc-contamination-screening","name":"Bio Read Qc Contamination Screening","description":"Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.","version":1,"lift":{"pass_rate_delta_pts":22.73,"pass_rate_pct":31.8,"total_cases":22,"passed_cases":7,"tokens_delta_pct":67.1,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-07-24T15:47:23.287903+00:00"},"skill_score":0.3182,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":22.73,"with_pass_pct":31.8,"without_pass_pct":9.1,"tokens_delta_pct":67.1,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":21,"verdict":"mixed","never_hurt":true,"completed_at":"2026-07-24T15:47:23.287903+00:00","run_id":"70ea7832-7cf5-43e7-aec7-5cacaa29e671","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":null,"content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"7953e14d66058024be98e1d2315a1cb7b31fbd5087035a0b0b15ea04f5eb8818","raw_url":"https://app.decimal.ai/s/bio-read-qc-contamination-screening/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-read-qc-contamination-screening"}