{"slug":"bio-read-qc-quality-filtering","source_name":"bio-read-qc-quality-filtering","name":"Bio Read Qc Quality Filtering","description":"Filter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis.","version":1,"lift":{"pass_rate_delta_pts":0,"pass_rate_pct":0,"total_cases":22,"passed_cases":0,"tokens_delta_pct":181.1,"turns_delta_pct":0,"verdict":"fail","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-07-26T09:15:13.505444+00:00"},"skill_score":null,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":0,"with_pass_pct":0,"without_pass_pct":0,"tokens_delta_pct":181.1,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"fail","never_hurt":true,"completed_at":"2026-07-26T09:15:13.505444+00:00","run_id":"23486c86-a0ab-420e-ba35-065b5537d141","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":null,"content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"7e1f05f30cf2f51ebb6b4adece85f969d09ecb06ba4b8c1760003e1b69d5e019","raw_url":"https://app.decimal.ai/s/bio-read-qc-quality-filtering/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-read-qc-quality-filtering"}