{"slug":"bio-workflows-atacseq-pipeline","source_name":"bio-workflows-atacseq-pipeline","name":"Bio Workflows Atacseq Pipeline","description":"End-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers alignment, peak calling with MACS3, QC metrics, and optional TOBIAS footprinting. Use when running end-to-end ATAC-seq analysis from FASTQ to differential accessibility.","version":2,"lift":{"pass_rate_delta_pts":18.18,"pass_rate_pct":86.4,"total_cases":22,"passed_cases":19,"tokens_delta_pct":104.4,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-02T17:15:54.737347+00:00"},"skill_score":0.8636,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":18.18,"with_pass_pct":86.4,"without_pass_pct":68.2,"tokens_delta_pct":104.4,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":21,"verdict":"mixed","never_hurt":true,"completed_at":"2026-08-02T17:15:54.737347+00:00","run_id":"69d0f417-2727-4cbd-85a9-8b2833bbfa3d","version_number":2,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":null,"install_count":1,"manifest_hash":"a1890be418a8ea8c76f9978956e5056c5be2c2ef2180ead364dde4d010b63e4f","raw_url":"https://app.decimal.ai/s/bio-workflows-atacseq-pipeline/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-workflows-atacseq-pipeline"}