{"slug":"bio-workflows-somatic-variant-pipeline","source_name":"bio-workflows-somatic-variant-pipeline","name":"Bio Workflows Somatic Variant Pipeline","description":"End-to-end somatic variant calling from tumor-normal paired samples using Mutect2 or Strelka2. Covers preprocessing, variant calling, filtering, and annotation for cancer genomics. Use when calling somatic mutations from tumor-normal pairs.","version":2,"lift":{"pass_rate_delta_pts":4.35,"pass_rate_pct":87,"total_cases":23,"passed_cases":20,"tokens_delta_pct":137,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-02T17:16:32.481080+00:00"},"skill_score":0.8696,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":4.35,"with_pass_pct":87,"without_pass_pct":82.6,"tokens_delta_pct":137,"turns_delta_pct":0,"total_cases":23,"cases_aggregated":23,"verdict":"mixed","never_hurt":false,"completed_at":"2026-08-02T17:16:32.481080+00:00","run_id":"7ff784ca-ae04-435a-b026-80bf0d57fbbc","version_number":2,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"6e059a33f4edcff517d178bea2355c8194fd1af19583aacac905a3251aada52c","raw_url":"https://app.decimal.ai/s/bio-workflows-somatic-variant-pipeline/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/bio-workflows-somatic-variant-pipeline"}