{"slug":"freedomintelligence-bio-gatk-variant-calling","source_name":"freedomintelligence/bio-gatk-variant-calling","name":"Freedomintelligence/Bio Gatk Variant Calling","description":"Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, and variant quality score recalibration (VQSR). Use when calling variants with GATK HaplotypeCaller.","version":1,"lift":{"pass_rate_delta_pts":12.5,"pass_rate_pct":100,"total_cases":24,"passed_cases":24,"tokens_delta_pct":233.3,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-02T21:38:22.166152+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":12.5,"with_pass_pct":100,"without_pass_pct":87.5,"tokens_delta_pct":233.3,"turns_delta_pct":0,"total_cases":24,"cases_aggregated":24,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-02T21:38:22.166152+00:00","run_id":"f65e6940-180b-4e25-8d82-d628877b130f","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":null,"install_count":0,"manifest_hash":"9d706920813c4e048ce8936d979c5094dd1c9fe43b1f5b615629049911d60fe2","raw_url":"https://app.decimal.ai/s/freedomintelligence-bio-gatk-variant-calling/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/freedomintelligence-bio-gatk-variant-calling"}