{"slug":"jaechang-hits-featurecounts-rna-counting","source_name":"jaechang-hits/featurecounts-rna-counting","name":"Jaechang Hits/Featurecounts Rna Counting","description":"Counts RNA-seq reads overlapping GTF gene features. Takes sorted STAR BAMs plus GTF; outputs a per-gene tab-delimited matrix across samples. Handles strandedness (0/1/2), paired-end, multi-sample batch counting in one command, and outputs assignment statistics. Use Salmon for alignment-free quantification; use featureCounts when STAR BAMs already exist.","version":1,"lift":{"pass_rate_delta_pts":4.55,"pass_rate_pct":95.5,"total_cases":22,"passed_cases":21,"tokens_delta_pct":218.4,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-24T11:44:51.921164+00:00"},"skill_score":0.9545,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":4.55,"with_pass_pct":95.5,"without_pass_pct":90.9,"tokens_delta_pct":218.4,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"mixed","never_hurt":true,"completed_at":"2026-08-24T11:44:51.921164+00:00","run_id":"37722157-3be5-4a6c-abd4-4974e1a3c086","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"GPL-3.0","install_count":0,"manifest_hash":"8de23ff5405d8849b951763809aac461d7eb8bc0643847747156a4d70ed7873a","raw_url":"https://app.decimal.ai/s/jaechang-hits-featurecounts-rna-counting/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/jaechang-hits-featurecounts-rna-counting"}