{"slug":"jaechang-hits-homer-motif-analysis","source_name":"jaechang-hits/homer-motif-analysis","name":"Jaechang Hits/Homer Motif Analysis","description":"De novo and known TF motif enrichment in ChIP-seq/ATAC-seq peaks via HOMER. findMotifsGenome.pl finds over-represented patterns vs background; annotatePeaks.pl assigns context (TSS distance, gene, repeat). Use after MACS3 to identify enriched TFs, annotate peaks with nearest genes, and validate ChIP-seq via the target motif.","version":1,"lift":{"pass_rate_delta_pts":31.82,"pass_rate_pct":100,"total_cases":22,"passed_cases":22,"tokens_delta_pct":360.5,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-24T18:26:56.974314+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":31.82,"with_pass_pct":100,"without_pass_pct":68.2,"tokens_delta_pct":360.5,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":20,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-24T18:26:56.974314+00:00","run_id":"3bd8dffe-a509-4a87-a908-5c1f573c770e","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"GPL-3.0","install_count":0,"manifest_hash":"93d621c4ea6a1f8c7b87473012d4885a5828af43bb1c0842be9d6ab481ba7ede","raw_url":"https://app.decimal.ai/s/jaechang-hits-homer-motif-analysis/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/jaechang-hits-homer-motif-analysis"}