{"slug":"jaechang-hits-kegg-pathway-analysis","source_name":"jaechang-hits/kegg-pathway-analysis","name":"Jaechang Hits/Kegg Pathway Analysis","description":"Guide to KEGG pathway enrichment for DEG results. Covers ORA vs GSEA, mandatory directionality splitting, KEGG organism codes, API failure handling with offline fallbacks, cross-condition comparisons, and answer-first reporting. Consult when running enrichment with clusterProfiler or gseapy.","version":1,"lift":{"pass_rate_delta_pts":29.17,"pass_rate_pct":100,"total_cases":24,"passed_cases":24,"tokens_delta_pct":200.9,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-24T00:01:28.059949+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":29.17,"with_pass_pct":100,"without_pass_pct":70.8,"tokens_delta_pct":200.9,"turns_delta_pct":0,"total_cases":24,"cases_aggregated":24,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-24T00:01:28.059949+00:00","run_id":"fded3f57-3971-479d-9f91-9c6e41985c45","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"CC-BY-4.0","install_count":0,"manifest_hash":"4fb03256c4acbfd076a71c978e8d9a181bccbbc73a784a8d7b2a2f1b87f2d738","raw_url":"https://app.decimal.ai/s/jaechang-hits-kegg-pathway-analysis/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/jaechang-hits-kegg-pathway-analysis"}