{"slug":"jaechang-hits-plink2-gwas-analysis","source_name":"jaechang-hits/plink2-gwas-analysis","name":"Jaechang Hits/Plink2 Gwas Analysis","description":"GWAS and population genetics tool. Processes PLINK (.bed/.bim/.fam), VCF, and BGEN; runs QC (MAF, HWE, missingness), IBD estimation, PCA, and linear/logistic regression GWAS. Outputs Manhattan-ready summary stats. Use regenie or SAIGE for biobanks (>100k samples) needing mixed models.","version":1,"lift":{"pass_rate_delta_pts":13.64,"pass_rate_pct":100,"total_cases":22,"passed_cases":22,"tokens_delta_pct":206.5,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-24T11:53:44.193320+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":13.64,"with_pass_pct":100,"without_pass_pct":86.4,"tokens_delta_pct":206.5,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-24T11:53:44.193320+00:00","run_id":"ac6d5b0f-bbd3-47a4-98c9-a100027ec2a8","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"GPL-3.0","install_count":0,"manifest_hash":"2d5baec05b8f8566539311fc47d8d1542807fa506125379183be76f60c0c543b","raw_url":"https://app.decimal.ai/s/jaechang-hits-plink2-gwas-analysis/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/jaechang-hits-plink2-gwas-analysis"}