{"slug":"jaechang-hits-salmon-rna-quantification","source_name":"jaechang-hits/salmon-rna-quantification","name":"Jaechang Hits/Salmon Rna Quantification","description":"Ultra-fast RNA-seq transcript/gene quantification via quasi-mapping (no BAM). Builds a k-mer index from transcriptome FASTA, quantifies in minutes. Outputs TPM/count tables (quant.sf) with optional GC- and sequence-bias correction. Integrates with tximeta/tximport for DESeq2/edgeR. Use STAR when a genome-aligned BAM is needed.","version":1,"lift":{"pass_rate_delta_pts":-100,"pass_rate_pct":95.5,"total_cases":22,"passed_cases":21,"tokens_delta_pct":348.8,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-24T11:44:25.429651+00:00"},"skill_score":null,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":-100,"with_pass_pct":0,"without_pass_pct":100,"tokens_delta_pct":348.8,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":21,"verdict":"mixed","never_hurt":false,"completed_at":"2026-08-24T11:44:25.429651+00:00","run_id":"6356b1e2-946d-4fda-ada3-39ecc89749c8","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"GPL-3.0","install_count":0,"manifest_hash":"c41fd14cb952ade95091e77a3272b3b99a1a1ada4adfd041626b0b7f5b3082eb","raw_url":"https://app.decimal.ai/s/jaechang-hits-salmon-rna-quantification/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/jaechang-hits-salmon-rna-quantification"}