{"slug":"jaechang-hits-snakemake-workflow-engine","source_name":"jaechang-hits/snakemake-workflow-engine","name":"Jaechang Hits/Snakemake Workflow Engine","description":"Python-based workflow manager for reproducible, scalable pipelines. Define rules with file-based dependencies; Snakemake resolves execution order and parallelism. Runs local, SLURM, LSF, AWS, GCP via profiles; per-rule conda/Singularity envs. For NGS pipelines, ML training, and multi-step file processing. Use Nextflow for Groovy dataflow or nf-core integration.","version":1,"lift":{"pass_rate_delta_pts":-100,"pass_rate_pct":90.9,"total_cases":22,"passed_cases":20,"tokens_delta_pct":481.9,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-24T11:17:28.767560+00:00"},"skill_score":null,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":-100,"with_pass_pct":0,"without_pass_pct":100,"tokens_delta_pct":481.9,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":22,"verdict":"mixed","never_hurt":false,"completed_at":"2026-08-24T11:17:28.767560+00:00","run_id":"01a57099-e075-49e5-afe4-9d5158b911ec","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"MIT","install_count":0,"manifest_hash":"08120e94978701a31a6ff9d8bb79c1ad9ecd193378eadd991e5b62a9657843fb","raw_url":"https://app.decimal.ai/s/jaechang-hits-snakemake-workflow-engine/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/jaechang-hits-snakemake-workflow-engine"}