{"slug":"mims-harvard-tooluniverse-fastq-qc","source_name":"mims-harvard/tooluniverse-fastq-qc","name":"Mims Harvard/Tooluniverse Fastq Qc","description":"FASTQ quality control and adapter/quality-trimming decisions with local NGS tools — run FastQC on raw reads, summarize a project with MultiQC, interpret per-base sequence quality, per-base N content, adapter content, overrepresented sequences, sequence duplication and GC content, and decide whether (and how) to trim with fastp / Cutadapt before downstream analysis. seqkit for read counts/stats/subsampling. Use when someone asks \"run QC on my FASTQs\", \"are my reads good quality?\", \"do I need to t","version":1,"lift":{"pass_rate_delta_pts":22.73,"pass_rate_pct":77.3,"total_cases":22,"passed_cases":17,"tokens_delta_pct":149.7,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-06T15:47:35.628281+00:00"},"skill_score":0.7727,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":22.73,"with_pass_pct":77.3,"without_pass_pct":54.5,"tokens_delta_pct":149.7,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":19,"verdict":"mixed","never_hurt":true,"completed_at":"2026-08-06T15:47:35.628281+00:00","run_id":"0f064988-fd57-414e-a320-49cf8fe91b35","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"Apache-2.0","install_count":0,"manifest_hash":"475fc9c11379b9ed144c076faaa59592dbf910a614f121f85d3590446147c741","raw_url":"https://app.decimal.ai/s/mims-harvard-tooluniverse-fastq-qc/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/mims-harvard-tooluniverse-fastq-qc"}