{"slug":"mims-harvard-tooluniverse-gene-enrichment","source_name":"mims-harvard/tooluniverse-gene-enrichment","name":"Mims Harvard/Tooluniverse Gene Enrichment","description":"Gene-set enrichment analysis — GO (Biological Process, Molecular Function, Cellular Component), KEGG, Reactome pathway enrichment via clusterProfiler, gseapy, ORA, GSEA. Use for interpreting DEG lists, screen hit lists, or any gene-list-to-pathways query. Includes simplify-cutoff handling and union-vs-total denominator conventions for percent-DE questions.","version":1,"lift":{"pass_rate_delta_pts":4.55,"pass_rate_pct":50,"total_cases":22,"passed_cases":11,"tokens_delta_pct":378.4,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-06T14:44:33.231654+00:00"},"skill_score":0.5,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":4.55,"with_pass_pct":50,"without_pass_pct":45.5,"tokens_delta_pct":378.4,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":13,"verdict":"mixed","never_hurt":false,"completed_at":"2026-08-06T14:44:33.231654+00:00","run_id":"283847a3-9991-4dd6-87aa-951e952e2e38","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"Apache-2.0","install_count":0,"manifest_hash":"2112e5324380195d7b6fb48cc8104d753af25a7b432aa05efa15c3fe4efd1ed0","raw_url":"https://app.decimal.ai/s/mims-harvard-tooluniverse-gene-enrichment/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/mims-harvard-tooluniverse-gene-enrichment"}