{"slug":"mims-harvard-tooluniverse-protein-modification-analysis","source_name":"mims-harvard/tooluniverse-protein-modification-analysis","name":"Mims Harvard/Tooluniverse Protein Modification Analysis","description":"Post-translational modification (PTM) analysis — phosphorylation, ubiquitination, acetylation, glycosylation, methylation. Uses iPTMnet (sites + enzymes), ProtVar (functional consequences), UniProt (baseline), STRING, ELM (linear motifs), MassIVE/ProteomeXchange (experimental). Use for PTM site annotation, kinase-substrate identification, and PTM-disease associations.","version":1,"lift":{"pass_rate_delta_pts":22.73,"pass_rate_pct":40.9,"total_cases":22,"passed_cases":9,"tokens_delta_pct":38.8,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-06T16:26:59.511471+00:00"},"skill_score":0.4091,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":22.73,"with_pass_pct":40.9,"without_pass_pct":18.2,"tokens_delta_pct":38.8,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":12,"verdict":"mixed","never_hurt":false,"completed_at":"2026-08-06T16:26:59.511471+00:00","run_id":"73477966-79e6-4891-9ced-8023fb582816","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"Apache-2.0","install_count":0,"manifest_hash":"41a68e0b1857a9069101f5c872d707257831260daae6fd0d040814792b3e62b0","raw_url":"https://app.decimal.ai/s/mims-harvard-tooluniverse-protein-modification-analysis/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/mims-harvard-tooluniverse-protein-modification-analysis"}