{"slug":"xuzhougeng-scgpt","source_name":"xuzhougeng/scgpt","name":"Xuzhougeng/Scgpt","description":"Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN tasks.\nFor probabilistic single-cell models (scVI etc.), use the scvi-tools library.","version":1,"lift":{"pass_rate_delta_pts":59.09,"pass_rate_pct":100,"total_cases":22,"passed_cases":22,"tokens_delta_pct":3.3,"turns_delta_pct":0,"verdict":"pass","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-08-14T03:12:04.171738+00:00"},"skill_score":1,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":59.09,"with_pass_pct":100,"without_pass_pct":40.9,"tokens_delta_pct":3.3,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":19,"verdict":"pass","never_hurt":true,"completed_at":"2026-08-14T03:12:04.171738+00:00","run_id":"28000c8e-d626-4245-8f36-c62d07bfff90","version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"Apache-2.0","install_count":0,"manifest_hash":"c952f615754548c53c511ccc1c621601cec6d5154295e43eeb73afc475fa2551","raw_url":"https://app.decimal.ai/s/xuzhougeng-scgpt/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/xuzhougeng-scgpt"}