{"slug":"xuzhougeng-singlecell-qc","source_name":"xuzhougeng/singlecell-qc","name":"Xuzhougeng/Singlecell Qc","description":"Use when designing, reviewing, or implementing single-cell RNA-seq QC in Python or R with a human-in-the-loop, data-driven approach. Trigger for scRNA QC metrics, per-sample diagnosis, threshold discussion, mitochondrial/ambient/doublet assessment, MAD vs fixed cutoffs, or refactoring automated merge-first QC. The analyst confirms key decisions at each step—agents must inspect data, propose options, and wait for approval before filtering, doublet removal, or merging. Not a turnkey pipeline skill","version":1,"lift":{"pass_rate_delta_pts":9.09,"pass_rate_pct":31.8,"total_cases":22,"passed_cases":7,"tokens_delta_pct":40.9,"turns_delta_pct":0,"verdict":"mixed","benchmark_model":"gemini-3.6-flash","grading_method":"judged","completed_at":"2026-09-24T21:00:46.223582+00:00"},"skill_score":0.3182,"benchmark_models":[{"model":"gemini-3.6-flash","headline":true,"delta_pts":9.09,"with_pass_pct":31.8,"without_pass_pct":22.7,"tokens_delta_pct":40.9,"turns_delta_pct":0,"total_cases":22,"cases_aggregated":13,"verdict":"mixed","never_hurt":false,"completed_at":"2026-09-24T21:00:46.223582+00:00","run_id":"7f7404fa-c736-451a-a57d-72dda1ac9d83","latest_attempt":{"id":"7f7404fa-c736-451a-a57d-72dda1ac9d83","runner_model":"gemini-3.6-flash","overall_verdict":"mixed","completed_at":"2026-09-24T21:00:46.223582+00:00","gate":null},"version_number":1,"is_latest_version":true,"gate":null}],"trust":{"skill_safety":"passed","safety_status":"clean","intent_verdict":"safe","content_status":"clean","indexable":true},"license":"AGPL-3.0","install_count":0,"total_uses":0,"total_users":0,"manifest_hash":"db96b2edb4762640927657ddcb22df68d5c3ddf884bae1a2af21eef05330eb94","install_name":"xuzhougeng-singlecell-qc","version_id":"17d3c1d7-418a-4def-856f-6eb85b9a2d13","body_sha256":"db96b2edb4762640927657ddcb22df68d5c3ddf884bae1a2af21eef05330eb94","render_hash":"2aa99e3754a4445e2a51af5bae01d34bacdbf8c711c605d1a8d542ae292adb63","raw_url":"https://app.decimal.ai/s/xuzhougeng-singlecell-qc/SKILL.md","scorecard_url":"https://app.decimal.ai/skills/xuzhougeng-singlecell-qc"}