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General-purpose research orchestrator. Routes ambiguous or multi-step requests to the right skill(s) from the medsci-skills bundle.
Passed 22 of 24 test cases with the skill, and 6 of 24 without it.
and 19 more in the full report
16 fixed6 passed either way2 still failing0 broke
Tokens, turns and time describe resource use, not a dollar price.
This benchmark measured an earlier version of the skill.
A newer attempt on gemini-3.8-flash on 10/21/2026 did not produce a publishable comparison (not comparable). The snapshot above is the previously measured run.
One of 16 test cases the skill fixed. Same model, same prompt, with and without the skill.
I need help with my research paper.
| Checked | Without skill | With skill |
|---|---|---|
| Asks exactly one clarifying question before routing | Missed | Passed |
The instructions your model reads when the skill loads.
Route research requests in the medsci-skills bundle to the right skill, or chain several skills in the correct order. You classify, plan and delegate: never produce a routed skill's output yourself — invoke the skill that owns it.
| Skill | Domain | When to Route |
|---|---|---|
| search-lit | Literature | Find papers, verify citations, build reference lists, check if a topic has been studied |
| design-study | Methodology | Review study design, identify leakage/bias, pick reporting guideline, validate analysis plan |
| intake-project | Project setup | New or messy project folder, "what is this project?", classify and scaffold |
| manage-project | Project mgmt | Scaffold directories, track progress, generate checklists and timelines |
| analyze-stats | Statistics | Generate R/Python code for diagnostic accuracy, demographics, meta-analysis stats, agreement, regression (logistic/linear), propensity score, repeated measures |
| make-figures | Visualization | ROC curves, forest plots, flow diagrams (PRISMA/CONSORT/STARD), Kaplan-Meier, Bland-Altman, visual/graphical abstracts |
| meta-analysis | Systematic review | Full MA pipeline: protocol, search, screening, extraction, synthesis, PRISMA-DTA |
| write-paper | Writing | IMRAD manuscript drafting (8-phase pipeline), any section writing |
| self-review | Quality | Pre-submission self-check with domain probes (Survival / SR-MA / Radiomics / Narrative); optional --panel for a high-stakes final QC pass |
| check-reporting | Compliance | Audit against 49 reporting guidelines and risk-of-bias tools |
| revise | Revision | Parse reviewer comments, generate point-by-point response, track changes |
| grant-builder | Funding | Structure grant proposals: significance, innovation, approach, milestones |
| present-paper | Presentation | Prepare academic talks: analyze paper, draft scripts, inject slide notes, Q&A prep |
| publish-skill | Packaging | Convert a personal skill into an open-source distributable package |
| calc-sample-size | Statistics | Sample size calculation (17 tests including Cox EPV), power analysis, IRB justification text |
| find-journal | Submission | Journal recommendation based on abstract/scope matching, post-rejection re-targeting |
| add-journal | Journal DB | Add a new journal to the profile database; extracts metadata from author guidelines |
| fulltext-retrieval | Literature | Batch download open-access PDFs by DOI using Unpaywall, PMC, OpenAlex APIs |
| deidentify | Data safety | De-identify clinical data containing PHI before any LLM processing. Standalone Python CLI (no LLM). |
| clean-data | Data | Data profiling, missing value flagging, outlier detection, cleaning code generation |
| generate-codebook | Data | Generate a citable data dictionary/codebook from a dataset; flags coded variables as [NEEDS DICTIONARY]; feeds /define-variables |
| version-dataset | Data | Content-hash manifest of a dataset; verify drift (schema/rows/values) and diff versions; reproducibility lock |
| write-protocol | Protocol | IRB/ethics protocol drafting, 4 core sections + 6 skeleton sections with TODO markers |
| define-variables | Operationalization | Literature-grounded variable definitions, cutoffs, DB-variable mappings; runs between /search-lit and /write-protocol for observational studies |
| verify-refs | Reference audit | Read-only PubMed/CrossRef audit of manuscript references; first-author cross-check; sole writer of qc/reference_audit.json. Never modifies refs |
| manage-refs | Reference lifecycle | Citekey validation, journal-CSL pandoc rendering, manuscript ↔ DOCX cross-reference QC, [N] ↔ [@key] marker conversion, Zotero CWYW field-code injection. Sole writer of manuscript_final.docx, qc/xref_audit.json |
| lit-sync | Reference sync | Zotero collection ↔ Better BibTeX manuscript/_src/refs.bib ↔ Obsidian literature notes. Sole writer of refs.bib (auto-export); upstream of manage-refs |
| obsidian-paper-vault | Vault build | A folder of PDFs → templated Obsidian literature notes + atomic concept notes synthesized across them. Enters the same vault folders as lit-sync from the PDF side |
test cases passed, vs 6 / 24 without
More skills from the same source and nearby in the registry, with their headline benchmark lift.