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Biomaster Workflows — measured AI agent skill | DecimalAI

Biomaster Workflows

SkillScore82Maintained

biomaster-workflows

Pipeline maestro

AI/MLby FreedomIntelligence

Links this skill to your agents and keeps it current with the author’s updates.

Automatic

Research pack

decimalai skills pull biomaster-workflows

Get this skill — curl · raw file

curl -fsSL https://app.decimal.ai/s/biomaster-workflows/SKILL.md

Raw file: /s/biomaster-workflows/SKILL.md ↗ · machine-readable summary at /s/biomaster-workflows.json ↗

In productionGlobal

how this skill behaves on real traffic · last 30 days

No production data for this skill yet — usage numbers appear here once agents start running it.

Anonymized aggregate across every org using this skill — proof from real production use, not a demo.

Does this skill help? · Benchmark: with vs. withoutsign in to run this on your agents

22 test cases from the publisher’s eval.yaml · each run twice on gemini-3.6-flash — with the skill injected, then without · last run 7d ago

Yes — +41% lift-27% tokens0% turns82% of whole cases pass with skill (18/22)

Test case	Without → With	Effect	Δ tokens	Δ turns
case-01	✗→✓	▲ Improved	-23%	0%
case-05	✗→✓	▲ Improved	-19%	0%
case-06	✗→✓	▲ Improved	-47%	0%
case-07	✗→✓	▲ Improved	-30%	0%
case-10	✗→✓	▲ Improved	-8%	0%

Showing 5 of 22 cases

SkillSafety

✓ 3 of 3 passed

Code scan15 of 15 checks clean

0 critical · 0 warning · 0 info — scanner v4 — 8/1/2026

live_secretremote_code_executionreverse_shelldata_exfiltrationssrf_metadataagent_snoopinganti_refusaldestructive_commandsobfuscated_unicodeunicode_homoglyphopaque_blobsuspicious_urltool_overreachtrigger_abuseprompt_injection_phrasing

IntentSafe

LLM judge · does the skill do what it claims

ContentClean

LLM judge · policy & harmful-content review

Source

Imported

FreedomIntelligence / OpenClaw-Medical-Skills

skills/biomaster-workflows/SKILL.md

View on GitHub ↗

License MITImported 8/1/2026Version v2

Skill contents

SKILL.md

<!--

COPYRIGHT NOTICE

This file is part of the "Universal Biomedical Skills" project.

Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>

All Rights Reserved.

#

This code is proprietary and confidential.

Unauthorized copying of this file, via any medium is strictly prohibited.

#

Provenance: Authenticated by MD BABU MIA

-->

BioMaster Workflows

Orchestrate BioMaster’s multi-agent pipelines (RNA-seq, ChIP-seq, single-cell, Hi-C) using the provided configs and repos to deliver reproducible outputs.

Workflow

Config prep: Populate YAML with tool paths, reference genomes, and workflow selection (rnaseq, chipseq, singlecell, hic).
Environment: cd repo && pip install -r requirements.txt (or container) prior to running.
Launch: python repo/run.py --config repo/config.yaml (or chosen config) and monitor progress.
Error recovery: Let BioMaster agents retry failing stages; review logs for missing reference/index files.
Output packaging: Collect BAMs/counts/peaks + QC + narrative summary of parameters and runtimes.

Guardrails

Fail fast when reference files or indices are absent to avoid wasted compute.
Record tool versions for every stage (alignment, quantification, etc.).
Require confirmation before deleting intermediates or rerunning destructive steps.

References

Full workflow descriptions, supported modalities, and repo links reside in README.md.

Want to see if biomaster-workflows would activate on your phrasing? Try it before you install — no LLM call, no signup.

Other measured skills in the registry, with their headline benchmark lift.