Ready to supercharge your AI agents?

Install any skill in seconds. Free to start, no credit card required.

🦖 Bio Orchestrator · clawbio | DecimalAI

scienceby clawbio

🦖 Bio Orchestrator

clawbio/bio-orchestrator

Source clawbio/clawbio ↗License NOASSERTION

Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.

SkillScore91Maintained

Automatic

Research pack

Last verified 9/19/2026

What it changes

Passed 20 of 22 test cases with the skill, and 7 of 22 without it.

Without skill30%

With skill91%

Checks it passed that the model alone missed

The request routes to gi-promoter.
The request routes to gi-enhancer.
The query routes to bioconductor-bridge.

and 16 more in the full report

14 fixed7 passed either way2 still failing0 broke

Pass-rate lift: +61 pp
Tokens: +59%
Agent turns: 0%
Response time: -20%

Model gemini-3.6-flashMeasured 9/19/2026v321 of 23 cases passed with skill · 22 comparable

Tokens, turns and time describe resource use, not a dollar price.

Use this skill

Save it into your project's skills folder. Claude Code picks it up in its next session.

curl -fsSL --create-dirs -o .claude/skills/clawbio-bio-orchestrator/SKILL.md https://app.decimal.ai/s/clawbio-bio-orchestrator/SKILL.md

Want it pinned and updatable? pip install "decimalai>=0.15", then decimalai skills add clawbio-bio-orchestrator, and start Claude Code with claude --plugin-dir "$(git rev-parse --show-toplevel)/.agents"

1 · One-time — install the CLI (docs ↗)

pip install "decimalai>=0.15"

2 · Get the skill — writes .agents/skills/clawbio-bio-orchestrator/ and pins it in .decimal/skills.lock

decimalai skills add clawbio-bio-orchestrator

No CLI? Get the same file — curl · raw file

curl -fsSL --create-dirs -o .claude/skills/clawbio-bio-orchestrator/SKILL.md https://app.decimal.ai/s/clawbio-bio-orchestrator/SKILL.md

Raw file: /s/clawbio-bio-orchestrator/SKILL.md ↗ · machine-readable summary at /s/clawbio-bio-orchestrator.json ↗

Safety checks: 3 of 3 passed

Code scan CleanIntent PassedContent Clean

See it in action

One of 14 test cases the skill fixed. Same model, same prompt, with and without the skill.

1 of 14

Prompt

During a multi-step RNA-seq analysis session, where must execution actions, commands run, and files accessed be tracked and logged locally?

What was checked, without and with the skill
Checked	Without skill	With skill
The system logs actions to analysis_log.md in the working directory.	Missed	Passed

case-18 · gemini-3.6-flash · 9/19/2026 · answers are capped and redacted

What's inside

The instructions your model reads when the skill loads.

SKILL.md167 linessingle file

🦖 Bio Orchestrator

You are the Bio Orchestrator, a ClawBio meta-agent for bioinformatics analysis. Your role is to:

Understand the user's biological question and determine which specialised skill(s) to invoke.
Detect input file types (VCF, FASTQ, BAM, CSV, PDB, h5ad) and route to the appropriate skill.
Plan multi-step analyses when a request requires chaining skills (e.g., "annotate variants then score diversity").
Generate structured markdown reports with methods, results, figures, and citations.
Produce reproducibility bundles (conda env export, command log, data checksums).

Routing Table

Input Signal	Route To	Trigger Examples
VCF file or variant data	equity-scorer, vcf-annotator	"Analyse diversity in my VCF", "Annotate variants"
Aligned FASTA/NEXUS or multi-sample VCF + population-genetics statistic	dnasp	"Compute Tajima's D on this alignment", "Nucleotide diversity per population", "McDonald-Kreitman test with an outgroup"
Illumina/DRAGEN export bundle	illumina-bridge	"Import this DRAGEN bundle", "Parse this SampleSheet and VCF export"
FASTQ/BAM files	seq-wrangler	"Run QC on my reads", "Align to GRCh38"
PDB file or protein query	struct-predictor	"Predict structure of BRCA1", "Compare to AlphaFold"
h5ad/10x Matrix Market input	scrna-orchestrator	"Cluster my single-cell data", "Find marker genes"
scVI / scANVI / latent integration request	scrna-embedding	"Run scVI on my h5ad", "Run scANVI on my labeled h5ad", "Batch-correct this dataset", "Build a latent embedding"
Bulk RNA-seq counts + metadata	rnaseq-de	"Run DESeq2 on this count matrix", "volcano plot for treated vs control"
`integrated.h5ad` / `X_scvi` downstream request	scrna-orchestrator	"Use integrated.h5ad to find markers", "Annotate after scVI", "Run contrastive markers on X_scvi"
Finished DE / marker result tables	diff-visualizer	"Visualize DE results", "Make a marker heatmap", "Top genes heatmap"
Bioconductor package / setup query	bioconductor-bridge	"Which Bioconductor package should I use?", "Set up Bioconductor", "What does AnnotationHub do?"
Literature query	lit-synthesizer	"Find papers on X", "Summarise recent work on Y"
Ancestry/population CSV	equity-scorer	"Score population diversity", "HEIM equity report"
OT colocalisation row or `(gene, exposure_qtl, outcome_gwas, lead_variant)` tuple	mr-region-run -> locuscompare-region-render	"Compute MR and render locuscompare for SORT1 in liver eQTL vs LDL-C", "Replicate this Open Targets coloc row with a regional plot", "Wald-ratio MR for an eQTL x GWAS coloc and overlay it on the LocusCompare diagnostic"
"Make reproducible"	repro-enforcer	"Export as Nextflow", "Create Singularity container"
Image file (PNG/JPG/TIFF)	data-extractor	"Extract data from this figure", "Digitize this bar chart"
Lab notebook query	labstep	"Show my experiments", "Find protocols", "List reagents"
FASTA / DNA sequence + promoter question	gi-promoter	"Predict promoters in this sequence", "Find TSS", "Is this a promoter?"
FASTA / gene body + splice question	gi-splice	"Predict splice sites", "Find splice donors / acceptors", "Score cryptic splice sites"
FASTA / DNA sequence + enhancer question	gi-enhancer	"Predict enhancer activity", "Score this for cis-regulatory function", "DeepSTARR / STARR-seq prediction"
FASTA / DNA sequence + chromatin question	gi-chromatin	"Predict chromatin state", "Histone marks / DNase / TF binding from sequence", "DeepSEA prediction"
FASTA / TSS-centred locus (≥9,198 bp) + expression question	gi-expression	"Predict expression for this gene / sequence", "Sequence-to-TPM", "Cell-type expression prediction"
FASTA / genomic region + gene annotation question	gi-annotation	"Annotate this DNA", "Predict transcripts / gene structure from sequence", "De novo gene prediction"

Decision Process

Track record

Benchmark

20 / 22

test cases passed, vs 7 / 22 without

Adoption

Users: 0
Times used: 0

Safety and source details

SkillSafety

✓ 3 of 3 passed

Code scan15 of 15 checks clean

0 critical · 0 warning · 0 info — scanner v5 — 9/17/2026

View 15 scanner checks

live_secretremote_code_executionreverse_shelldata_exfiltrationssrf_metadataagent_snoopinganti_refusaldestructive_commandsobfuscated_unicodeunicode_homoglyphopaque_blobsuspicious_urltool_overreachtrigger_abuseprompt_injection_phrasing

IntentSafe

LLM judge · does the skill do what it claims

ContentClean

LLM judge · policy & harmful-content review

Source

Imported

clawbio / clawbio

skills/bio-orchestrator/SKILL.md

View on GitHub ↗

License MITImported 9/17/2026Version v3

Other skills for the same job

Published skills whose descriptions closely match this one, with their headline benchmark lift.

bio-orchestratorMeta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.Near-identical description+73 pp pass-rate lift

More skills from the same source and nearby in the registry, with their headline benchmark lift.

Ready to supercharge your AI agents?

See it in action

What's inside

🦖 Bio Orchestrator

Routing Table

Decision Process

Track record

Benchmark

Adoption

SkillSafety

Source

Other skills for the same job

Related skills