Loading skill
Install any skill in seconds. Free to start, no credit card required.
Get Started Free →clawbio/rnaseq-de
Differential expression analysis for bulk RNA-seq and pseudo-bulk count matrices with QC, PCA, and contrast testing.
Passed 13 of 18 test cases with the skill, and 7 of 18 without it.
and 6 more in the full report
7 fixed9 passed either way6 still failing0 broke
Tokens, turns and time describe resource use, not a dollar price.
One of 7 test cases the skill fixed. Same model, same prompt, with and without the skill.
Where is the shell script containing the exact executed command logged within the DE output directory structure?
| Checked | Without skill | With skill |
|---|---|---|
| Logs execution commands in reproducibility/commands.sh. | Missed | Passed |
The instructions your model reads when the skill loads.
This skill performs differential expression on bulk RNA-seq or pseudo-bulk count matrices.
.csv or .tsv): rows are genes, columns are samples, first column is gene identifier.csv or .tsv): one row per sample, must include sample_id~ condition or ~ batch + conditionfactor,numerator,denominator (e.g. condition,treated,control)rnaseq_de_report/
├── report.md
├── figures/
│ ├── pca.png
│ ├── volcano.png
│ └── ma_plot.png
├── tables/
│ ├── qc_summary.csv
│ ├── normalized_counts.csv
│ └── de_results.csv
└── reproducibility/
├── commands.sh
├── environment.yml
└── checksums.sha256
test cases passed, vs 7 / 18 without
Published skills whose descriptions closely match this one, with their headline benchmark lift.
More skills from the same source and nearby in the registry, with their headline benchmark lift.