Loading skill
Install any skill in seconds. Free to start, no credit card required.
Get Started Free →lingxling/biopython
Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks.
Passed 19 of 21 test cases with the skill, and 20 of 21 without it.
1 fixed19 passed either way0 still failing2 broke
Tokens, turns and time describe resource use, not a dollar price.
A test case the skill fixed. Same model, same prompt, with and without the skill.
I have a multiple sequence alignment file `alignment.phy` formatted in PHYLIP style and need to convert it directly to FASTA format `alignment.fasta` in Python without parsing records manually.
| Checked | Without skill | With skill |
|---|---|---|
| Calls AlignIO.convert to convert between alignment formats. | Missed | Passed |
The instructions your model reads when the skill loads.
Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks. The current version is Biopython 1.85 (released January 2025), which supports Python 3 and requires NumPy.
Use this skill when:
Biopython is organized into modular sub-packages, each addressing specific bioinformatics domains:
Install Biopython using pip (requires Python 3 and NumPy):
test cases passed, vs 20 / 21 without
Published skills whose descriptions closely match this one, with their headline benchmark lift.
More skills from the same source and nearby in the registry, with their headline benchmark lift.