Research Ideation

Supports the complete workflow for the research project initiation phase, from vague idea to a traceable research contract: research question, hypothesis, evidence needs, falsification criteria, method selection, and next action.

Core Features

1. Idea Brainstorming (5W1H Framework)

Systematically brainstorm research ideas using the 5W1H framework:

• What: What problem or phenomenon to study
• Why: Why this problem is important
• Who: Target audience and stakeholders
• When: Time scope and context of the research
• Where: Application scenarios and domains
• How: Preliminary research methodology ideas

Integration with superpowers:brainstorming: Can invoke the superpowers:brainstorming skill for interactive brainstorming to help rapidly generate and evaluate research ideas.

2. Literature Review

Systematically search, analyze, and synthesize related literature:

• Build effective search keywords
• Search via WebSearch across academic databases (arXiv, Google Scholar, etc.)
• Screen and evaluate paper quality
• Identify research trends and gaps
• Generate structured literature reviews from evidence-labeled sources
• Zotero Integration: Papers are automatically added to Zotero via DOI, organized into topic-based collections, and open-access PDFs are auto-attached for full-text reading

3. Gap Analysis

Systematically identify and evaluate research gaps:

• Literature gaps: Identify topics or questions not yet sufficiently studied
• Methodological gaps: Discover limitations and improvement opportunities in existing methods
• Application gaps: Identify opportunities for theory-to-practice transfer
• Interdisciplinary gaps: Discover research opportunities at the intersection of different fields
• Temporal gaps: Identify new research needs arising from changes over time

Analysis Dimensions:

• Coverage of research topics
• Comparison of strengths and weaknesses of existing methods
• Completeness of experimental setups
• Availability of datasets and benchmarks
• Gap between theory and practice

4. Research Question Definition

Formulate specific research questions based on literature analysis:

• Identify research gaps and opportunities
• Apply SMART principles to formulate questions
• Evaluate importance, novelty, and feasibility
• Define research objectives and expected contributions
• Write a Research Question Card that states the hypothesis, current evidence, missing evidence, support criteria, falsification criteria, and minimal next action
• Apply the proposal readiness gate before turning a card into a polished proposal

5. Method Selection

Select appropriate research methods:

• Analyze strengths and weaknesses of existing methods
• Evaluate method applicability
• Identify required technologies and resources
• Consider method feasibility

6. Research Planning

Develop detailed research plans:

• Plan research timeline
• Define milestones and deliverables
• Identify potential risks
• Assess resource requirements

When to Use

Scenarios for This Skill

Use the research-ideation skill in the following situations:

1. Starting a new research project - Have research interests but no clear research question yet
2. Literature review - Need to systematically understand a research field
3. Research question formulation - Need to transform vague ideas into specific research questions
4. Method selection - Need to choose appropriate research methods and technical approaches
5. Research planning - Need to plan research timeline and resources

Typical Workflow

Research interest → Idea brainstorming (5W1H) → Research Question Card → Evidence Records → Gap analysis → Proposal readiness gate → Select method or experiment → Decision

Conditional Outputs:

• research-question-card.md - Always generate this for research startup or intake.
• literature-review.md - Generate only when evidence-labeled sources are sufficient for synthesis.
• research-proposal.md - Generate only when a selected Research Question Card passes the evidence gate.
• references.bib - Generate only when reliable citation metadata exists.
• Zotero collection with organized papers and PDFs - Create only when Zotero is configured, writable, and the user is not asking for dry-run/audit mode.

Integration with Other Systems

Complete Research Workflow

research-ideation (Research initiation)
    ↓
Experiment execution (completed by user)
    ↓
results-analysis (Results analysis)
    ↓
ml-paper-writing (Paper writing)

Data Flow

• Research Question Card → Guides literature scope, experiment design, and method selection
• Evidence Records → Carry source type, claim strength, and allowed/forbidden wording into literature synthesis, project knowledge, and later claim audit
• Proposal Readiness Gate → Prevents abstract-only or webpage-placeholder evidence from becoming a polished proposal
• Experimental results → results-analysis for statistical analysis and claim candidates
• Analysis results → results-report and ml-paper-writing with explicit evidence limits

Zotero Integration

Through the Zotero MCP server, the research-ideation workflow automates literature management:

• Paper Discovery: WebSearch finds relevant papers across academic databases
• Auto-Import: Extract DOI / arXiv ID / landing-page URLs from search results, then use zotero_add_items_by_identifier to prefer paper/preprint imports before any webpage fallback
• Collection Organization: zotero_create_collection creates topic-based collections with standard sub-collections (Core Papers, Methods, Applications, Baselines, To-Read)
• PDF Attachment: zotero_add_items_by_identifier(..., attach_pdf=true) runs a PDF cascade (landing-page PDF hints → direct PDF → Unpaywall), and zotero_find_and_attach_pdfs can be used as a follow-up sweep for remaining items
• Full-Text Reading: zotero_get_item_fulltext reads indexed PDF content for analysis and note-taking
• Library Search: zotero_search_items and zotero_get_collection_items browse existing papers to avoid duplicates

Key Configuration

• Literature search scope: Papers from the last 3 years by default, configurable
• Output format: Markdown format for easy editing and version control
• Citation management: Generates references in BibTeX format
• Zotero collection naming: Research-{topic}-{YYYY} format
• PDF auto-attach: Enabled by default for open-access papers via Unpaywall

Additional Resources

Reference Files

Detailed methodology guides, loaded on demand:

• references/5w1h-framework.md - 5W1H Framework Guide
• What, Why, Who, When, Where, How — six dimensions
• Systematic approach to brainstorming research ideas
• Integration with superpowers:brainstorming
• Usage examples and best practices

• references/literature-search-strategies.md - Literature Search Strategies
• Keyword construction techniques
• Academic database selection (arXiv, Google Scholar)
• Search tips and screening criteria
• Paper quality evaluation methods
• DOI extraction and Zotero auto-import workflow

• references/zotero-integration-guide.md - Zotero MCP Integration Guide
• Available Zotero MCP tools (browse, add, cite)
• Collection organization strategy and naming conventions
• Automated workflow: WebSearch → DOI → Zotero import → PDF attach
• Full-text reading and structured note-taking
• Common issues and troubleshooting

• references/gap-analysis-guide.md - Gap Analysis Guide
• 5 types of Gap Analysis (literature, methodological, application, interdisciplinary, temporal)
• 5 analysis dimensions
• Systematic approach to identifying research opportunities
• Usage examples and best practices

• references/research-question-formulation.md - Research Question Formulation
• Applying SMART principles
• Question type classification (exploratory, confirmatory, applied)
• Evaluation criteria (importance, novelty, feasibility)
• Defining research objectives and contributions

• references/research-contract.md - Research Contract
• Research Question Card template
• Evidence Record template
• Claim Candidate template
• Claim strength rules

• references/method-selection-guide.md - Method Selection Guide
• Common research method classification
• Method applicability analysis
• Strengths and weaknesses comparison
• Resource requirement assessment

• references/research-planning.md - Research Planning
• Timeline planning methods
• Milestone definition techniques
• Risk identification and mitigation
• Resource allocation strategies

Example Files

Complete working examples:

• examples/example-literature-review.md - Literature Review Example
• Demonstrates structured literature review format
• Includes research trend analysis and gap identification

• examples/example-research-proposal.md - Research Proposal Example
• Demonstrates complete research proposal structure
• Includes complete examples of question, method, and plan