Ready to supercharge your AI agents?

Install any skill in seconds. Free to start, no credit card required.

Benchling Integration · k-dense-ai | DecimalAI

codingby k-dense-ai

Benchling Integration

k-dense-ai/benchling-integration

Source k-dense-ai/scientific-agent-skills ↗License MIT

Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries.

SkillScore91Maintained

Automatic

Coding pack

Last verified 9/8/2026

What it changes

Passed 21 of 23 test cases with the skill, and 7 of 23 without it.

Without skill30%

With skill91%

Checks it passed that the model alone missed

Mentions Authentication and setup.
Includes arXiv link or DOI for 2609.00065.
Imports RetryStrategy from benchling_sdk.retry module.

and 19 more in the full report

15 fixed6 passed either way1 still failing1 broke

Pass-rate lift: +61 pp
Tokens: +40%
Agent turns: 0%
Response time: -32%

Model gemini-3.6-flashMeasured 9/8/2026v2 · latest is v321 of 23 cases passed with skill

Tokens, turns and time describe resource use, not a dollar price.

This benchmark measured an earlier version of the skill.

Use this skill

Save it into your project's skills folder. Claude Code picks it up in its next session.

curl -fsSL --create-dirs -o .claude/skills/k-dense-ai-benchling-integration/SKILL.md https://app.decimal.ai/s/k-dense-ai-benchling-integration/SKILL.md

Want it pinned and updatable? pip install "decimalai>=0.15", then decimalai skills add k-dense-ai-benchling-integration, and start Claude Code with claude --plugin-dir "$(git rev-parse --show-toplevel)/.agents"

1 · One-time — install the CLI (docs ↗)

pip install "decimalai>=0.15"

2 · Get the skill — writes .agents/skills/k-dense-ai-benchling-integration/ and pins it in .decimal/skills.lock

decimalai skills add k-dense-ai-benchling-integration

No CLI? Get the same file — curl · raw file

curl -fsSL --create-dirs -o .claude/skills/k-dense-ai-benchling-integration/SKILL.md https://app.decimal.ai/s/k-dense-ai-benchling-integration/SKILL.md

Raw file: /s/k-dense-ai-benchling-integration/SKILL.md ↗ · machine-readable summary at /s/k-dense-ai-benchling-integration.json ↗

Safety checks: 3 of 3 passed

Code scan CleanIntent PassedContent Clean

See it in action

One of 15 test cases the skill fixed. Same model, same prompt, with and without the skill.

1 of 15

Prompt

We want to configure event-driven automation for Benchling entity updates using AWS services. Which AWS service does Benchling directly publish events to, and what reference document in the integration package details the event payload schema and Lambda handler set up?

What was checked, without and with the skill
Checked	Without skill	With skill
Identifies AWS EventBridge as the destination event bus.	Passed	Passed
References references/eventbridge.md for payload schemas and Lambda setup.	Missed	Passed

case-15 · gemini-3.6-flash · 9/8/2026 · answers are capped and redacted

What's inside

The instructions your model reads when the skill loads.

SKILL.md154 lines6 files

Benchling Integration

When to use

Use this skill for Benchling registry entities, sequence imports, inventory, ELN entries, workflow tasks, apps, event-driven integrations, and warehouse analytics.

Reviewed 2026-09-30: examples target the released benchling-sdk 1.25.0 and its stable v2 API models. The current authentication guide recommends V3 for new development, while the V3 guide still describes endpoint-specific early access. Confirm your tenant's V3 availability and stability before migrating; these v2 SDK examples must not be mechanically rewritten to V3.

SDK imports, model serialization, and request construction were checked locally against 1.25.0. Tenant-dependent examples are illustrative: no authenticated requests, mutations, AWS deployment, or warehouse connection were run.

Workflow

Identify the tenant, API version, identity, and permissions. Use OAuth app credentials for background integrations; use delegated authorization when acting as an individual user. See authentication.
Read the relevant schema and resolve actual folder, registry, status, and dropdown IDs. Preserve sequence alphabet/topology and sample units. A valid Python model does not establish biological correctness or satisfaction of a tenant's required fields.
Read a small filtered page before writing. Use typed SDK methods and check their actual parameter names; not all services share the same CRUD naming convention.
Construct and serialize a representative payload. For imports, retain external IDs and returned Benchling IDs so a retry can reconcile a partial run without duplicates.
Perform the requested operation and read back the result. Check terminal async status; completed polling can still mean FAILED.

Setup and a read-only query

uv pip install "benchling-sdk==1.25.0"

import os

Track record

Benchmark

21 / 23

test cases passed, vs 7 / 23 without

Adoption

Users: 0
Times used: 0

Safety and source details

SkillSafety

✓ 3 of 3 passed

Code scan15 of 15 checks clean

0 critical · 0 warning · 0 info — scanner v5 — 10/8/2026

View 15 scanner checks

live_secretremote_code_executionreverse_shelldata_exfiltrationssrf_metadataagent_snoopinganti_refusaldestructive_commandsobfuscated_unicodeunicode_homoglyphopaque_blobsuspicious_urltool_overreachtrigger_abuseprompt_injection_phrasing

IntentSafe

LLM judge · does the skill do what it claims

ContentClean

LLM judge · policy & harmful-content review

Source

Imported

k-dense-ai / scientific-agent-skills

skills/benchling-integration/SKILL.md

View on GitHub ↗

License MITImported 10/8/2026Version v3Bundled 5 files

Other skills for the same job

Published skills whose descriptions closely match this one, with their headline benchmark lift.

jaechang-hits/benchling-integrationBenchling R&D Python SDK: CRUD on registry entities (DNA, RNA, proteins, custom), inventory, ELN, workflow automation. Needs Benchling account and API key. Use biopython for local sequence analysis; pubchem for chemical DBs.Close match+44 pp pass-rate lift

More skills from the same source and nearby in the registry, with their headline benchmark lift.

Ready to supercharge your AI agents?

See it in action

What's inside

Benchling Integration

When to use

Workflow

Setup and a read-only query

Track record

Benchmark

Adoption

SkillSafety

Source

Other skills for the same job

Related skills