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Biological Function Mapping · yogsoth-ai | DecimalAI

scienceby yogsoth-ai

Biological Function Mapping

yogsoth-ai/biological-function-mapping

Source yogsoth-ai/de-anthropocentric-research-engine ↗License Apache-2.0

Map technical functions to biological systems. Orchestrates problem-biologization → organism-discovery → functional-model-biology.

SkillScore77Maintained

Automatic

Research pack

Last verified 8/22/2026

What it changes

Passed 16 of 21 test cases with the skill, and 7 of 21 without it.

Without skill32%

With skill77%

Checks it passed that the model alone missed

Requires completing at least 3 functional models.
Specifies that at least 5 organisms must be discovered.
Identifies web-search as the support procedure for web queries.

and 14 more in the full report

12 fixed5 passed either way3 still failing2 broke

Pass-rate lift: +45 pp
Tokens: +14%
Agent turns: 0%
Response time: -9%

Model gemini-3.6-flashMeasured 8/22/2026v117 of 22 cases passed with skill · 21 comparable

Tokens, turns and time describe resource use, not a dollar price.

Use this skill

Save it into your project's skills folder. Claude Code picks it up in its next session.

curl -fsSL --create-dirs -o .claude/skills/yogsoth-ai-biological-function-mapping/SKILL.md https://app.decimal.ai/s/yogsoth-ai-biological-function-mapping/SKILL.md

Want it pinned and updatable? pip install "decimalai>=0.15", then decimalai skills add yogsoth-ai-biological-function-mapping, and start Claude Code with claude --plugin-dir "$(git rev-parse --show-toplevel)/.agents"

1 · One-time — install the CLI (docs ↗)

pip install "decimalai>=0.15"

2 · Get the skill — writes .agents/skills/yogsoth-ai-biological-function-mapping/ and pins it in .decimal/skills.lock

decimalai skills add yogsoth-ai-biological-function-mapping

No CLI? Get the same file — curl · raw file

curl -fsSL --create-dirs -o .claude/skills/yogsoth-ai-biological-function-mapping/SKILL.md https://app.decimal.ai/s/yogsoth-ai-biological-function-mapping/SKILL.md

Raw file: /s/yogsoth-ai-biological-function-mapping/SKILL.md ↗ · machine-readable summary at /s/yogsoth-ai-biological-function-mapping.json ↗

Safety checks: 3 of 3 passed

Code scan CleanIntent PassedContent Clean

See it in action

One of 12 test cases the skill fixed. Same model, same prompt, with and without the skill.

1 of 12

Prompt

Which support procedure should be executed when querying general internet sources for biological adaptations in desert flora?

What was checked, without and with the skill
Checked	Without skill	With skill
Identifies web-search as the support procedure for web queries.	Missed	Passed

case-18 · gemini-3.6-flash · 8/22/2026 · answers are capped and redacted

What's inside

The instructions your model reads when the skill loads.

SKILL.md51 linessingle file

Biological Function Mapping

Map technical functions to biological systems via biologize→discover→model pipeline.

Stages

Stage 1: Problem Biologization

Translate the technical problem into a biological function need statement using problem-biologization SOP. Frame in terms of what function nature must achieve, not how.

Stage 2: Organism Discovery

Search for organisms that solve the biologized problem using organism-discovery SOP. Identify champion organisms across multiple phyla/kingdoms for diversity.

Stage 3: Functional Modeling

For each promising organism, build a functional model (energy/matter/information flows) using functional-model-biology SOP. Identify the mechanism that achieves the target function.

Minimum Yield

Metric	Floor
Biological function statements	≥2
Organisms discovered	≥5
Biological systems mapped to technical functions	≥3
Functional models completed	≥3

Available SOPs

SOP	Role
problem-biologization	Stage 1 — translate technical→biological
organism-discovery	Stage 2 — find champion organisms
functional-model-biology	Stage 3 — build functional models
biological-strategy-extraction	Post — extract transferable strategies
web-search	Support — search for biological solutions
paper-overview	Support — find academic biology sources

Track record

Benchmark

16 / 21

test cases passed, vs 7 / 21 without

Adoption

Users: 0
Times used: 0

Safety and source details

SkillSafety

✓ 3 of 3 passed

Code scan15 of 15 checks clean

0 critical · 0 warning · 0 info — scanner v4 — 8/3/2026

View 15 scanner checks

live_secretremote_code_executionreverse_shelldata_exfiltrationssrf_metadataagent_snoopinganti_refusaldestructive_commandsobfuscated_unicodeunicode_homoglyphopaque_blobsuspicious_urltool_overreachtrigger_abuseprompt_injection_phrasing

IntentSafe

LLM judge · does the skill do what it claims

ContentClean

LLM judge · policy & harmful-content review

Source

Imported

yogsoth-ai / de-anthropocentric-research-engine

skills/biological-function-mapping/SKILL.md

View on GitHub ↗

License Apache-2.0Imported 8/3/2026Version v1

Other skills for the same job

Published skills whose descriptions closely match this one, with their headline benchmark lift.

yogsoth-ai/functional-analogyMap technical functions to biological functions, find organisms solving equivalent problems. Deep functional matching across domains.Close match+55 pp pass-rate lift

More skills from the same source and nearby in the registry, with their headline benchmark lift.

Ready to supercharge your AI agents?

See it in action

What's inside

Biological Function Mapping

Stages

Stage 1: Problem Biologization

Stage 2: Organism Discovery

Stage 3: Functional Modeling

Minimum Yield

Available SOPs

Track record

Benchmark

Adoption

SkillSafety

Source

Other skills for the same job

Related skills